OKVAR-Boost (Operator-valued Kernel-based Vector AutoRegressive Boosting)

gradient boosting, in silico network construction, random forest, elastic net, gene regulatory networks, DREAM 3, computational systems biology, time-series gene expression

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MPCBS (Multiplatform circular binary segmentation)

copy number event detection, affymetrix, illumina, agilent, TCGA, glioblastoma multiform, CBS, consensus, genomics, array CGH

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CC-PAC (Consensus clustering with probability of ambiguous clustering)

consensus clustering, unsupervised discovery of subtypes, detection of optimal number of clusters, GAP, silhouette width, CLEST, PCA, gene expression microarray

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